Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf262 domain-containing protein | DXC44_13390 | Not Available | Positive | 3063165 - 3064904 | 68104.5 |
| dead/deah box helicase | DXC44_13395 | Not Available | Positive | 3064971 - 3067673 | 102591.0 |
| sam-dependent dna methyltransferase | DXC44_13400 | Not Available | Positive | 3067678 - 3069096 | 53140.6 |
| duf1016 domain-containing protein | DXC44_13405 | Not Available | Positive | 3069100 - 3070230 | 44049.9 |
| restriction endonuclease subunit s | DXC44_13410 | Not Available | Positive | 3070276 - 3071586 | 48976.0 |
| integrase | DXC44_13420 | Not Available | Positive | 3072063 - 3072866 | 31555.3 |
| restriction endonuclease subunit s | DXC44_13425 | Not Available | Negative | 3072897 - 3074216 | 49733.9 |
| hypothetical protein | DXC44_13430 | Not Available | Negative | 3075001 - 3075204 | 7982.77 |
| cell surface protein | DXC44_13435 | Not Available | Positive | 3076208 - 3079039 | 98174.0 |
| pqqd family protein | DXC44_13440 | Not Available | Positive | 3079152 - 3079421 | 10032.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

