Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_13335 | Not Available | Positive | 3053383 - 3053592 | 8234.29 |
| pyridoxal phosphate-dependent aminotransferase | DXC44_13340 | Not Available | Negative | 3053684 - 3054847 | 44389.1 |
| duf3737 family protein | DXC44_13345 | Not Available | Negative | 3054857 - 3055723 | 33228.2 |
| alpha/beta hydrolase | DXC44_13350 | Not Available | Negative | 3055839 - 3056894 | 39271.1 |
| hypothetical protein | DXC44_13355 | Not Available | Positive | 3057173 - 3057352 | 6355.62 |
| sugar o-acetyltransferase | DXC44_13360 | Not Available | Negative | 3057374 - 3057949 | 20876.8 |
| hypothetical protein | DXC44_13365 | Not Available | Negative | 3057964 - 3058251 | 10636.0 |
| alpha/beta hydrolase | DXC44_13370 | Not Available | Negative | 3058616 - 3059485 | 32862.5 |
| hypothetical protein | DXC44_13375 | Not Available | Positive | 3059751 - 3061418 | 64807.9 |
| xre family transcriptional regulator | DXC44_13385 | Not Available | Positive | 3062894 - 3063097 | 7754.65 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

