Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase m64 | DXC44_01150 | Not Available | Negative | 320931 - 322316 | 52143.5 |
| asnc family transcriptional regulator | DXC44_01155 | Not Available | Positive | 322345 - 322821 | 17875.6 |
| dihydrofolate reductase | DXC44_01160 | Not Available | Negative | 322825 - 323319 | 18849.7 |
| thymidylate synthase | DXC44_01165 | Not Available | Negative | 323403 - 324197 | 30479.3 |
| duf5056 domain-containing protein | DXC44_01170 | Not Available | Negative | 324279 - 324608 | 12355.1 |
| sigma-70 family rna polymerase sigma factor | DXC44_01175 | Not Available | Negative | 324592 - 325140 | 21091.3 |
| hypothetical protein | DXC44_01180 | Not Available | Negative | 325143 - 325850 | 26007.5 |
| rrna cytosine-c5-methyltransferase | DXC44_01185 | Not Available | Positive | 325982 - 327409 | 53405.0 |
| dna topoisomerase iii | DXC44_01190 | Not Available | Negative | 327546 - 329687 | 79873.0 |
| hypothetical protein | DXC44_01195 | Not Available | Positive | 329840 - 330019 | 7190.93 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

