Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrolase | DXC44_13070 | Not Available | Negative | 2993333 - 2996089 | 104295.0 |
| six-hairpin glycosidase | DXC44_13075 | Not Available | Negative | 2996141 - 2999452 | 126805.0 |
| hypothetical protein | DXC44_13080 | Not Available | Positive | 2999488 - 2999697 | 8280.6 |
| kama family protein | DXC44_13085 | Not Available | Positive | 2999772 - 3001883 | 81903.2 |
| tonb-dependent receptor | DXC44_13090 | Not Available | Negative | 3001972 - 3004305 | 87135.7 |
| hypothetical protein | DXC44_13095 | Not Available | Negative | 3004437 - 3004775 | 12711.8 |
| bifunctional metallophosphatase/5'-nucleotidase | DXC44_13100 | Not Available | Negative | 3004780 - 3006522 | 65563.7 |
| sensor histidine kinase | DXC44_13105 | Not Available | Negative | 3006534 - 3008537 | 75570.5 |
| j domain-containing protein | DXC44_13110 | Not Available | Positive | 3008584 - 3009555 | 35196.0 |
| hypothetical protein | DXC44_13115 | Not Available | Positive | 3009571 - 3009858 | 11413.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

