Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_13020 | Not Available | Positive | 2979920 - 2980318 | 15058.6 |
| clostripain | DXC44_13025 | Not Available | Negative | 2980302 - 2981564 | 46815.5 |
| hypothetical protein | DXC44_13030 | Not Available | Negative | 2981575 - 2981970 | 15199.7 |
| rna polymerase sigma factor rpod/siga | DXC44_13035 | Not Available | Negative | 2982192 - 2983052 | 32805.3 |
| do family serine endopeptidase | DXC44_13040 | Not Available | Negative | 2983292 - 2984815 | 53839.6 |
| duf417 domain-containing protein | DXC44_13045 | Not Available | Negative | 2985138 - 2985728 | 21267.4 |
| helix-turn-helix domain-containing protein | DXC44_13050 | Not Available | Negative | 2985821 - 2986657 | 32666.4 |
| response regulator | DXC44_13055 | Not Available | Positive | 2986986 - 2990123 | 119603.0 |
| hypothetical protein | DXC44_13060 | Not Available | Negative | 2990586 - 2991926 | 49758.5 |
| glycoside hydrolase family 28 protein | DXC44_13065 | Not Available | Negative | 2991935 - 2993266 | 49523.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

