Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-alpha-glucanotransferase | DXC44_12870 | Not Available | Negative | 2940308 - 2942248 | 74889.3 |
| rhomboid family intramembrane serine protease | DXC44_12875 | Not Available | Positive | 2942429 - 2943094 | 25210.0 |
| formate-dependent phosphoribosylglycinamide formyltransferase | DXC44_12880 | Not Available | Negative | 2943577 - 2944746 | 42895.6 |
| pspc domain-containing protein | DXC44_12885 | Not Available | Negative | 2944844 - 2945890 | 38246.6 |
| padr family transcriptional regulator | DXC44_12890 | Not Available | Negative | 2945903 - 2946229 | 12456.0 |
| gnat family n-acetyltransferase | DXC44_12895 | Not Available | Positive | 2946406 - 2946903 | 19247.4 |
| dna alkylation repair protein | DXC44_12900 | Not Available | Positive | 2946924 - 2947640 | 28303.2 |
| n-glycanase | DXC44_12905 | Not Available | Negative | 2947745 - 2948995 | 46696.9 |
| duf4301 family protein | DXC44_12910 | Not Available | Negative | 2949115 - 2950632 | 56797.3 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | DXC44_12915 | Not Available | Positive | 2950776 - 2952989 | 84511.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

