Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| decarboxylating nadp(+)-dependent phosphogluconate dehydrogenase | DXC44_12765 | Not Available | Negative | 2917590 - 2919026 | 53142.1 |
| dicarboxylate/amino acid:cation symporter | DXC44_12770 | Not Available | Positive | 2919111 - 2920289 | 42069.5 |
| hypothetical protein | DXC44_12775 | Not Available | Negative | 2920494 - 2921663 | 45056.2 |
| l-asparaginase 2 | DXC44_12780 | Not Available | Negative | 2921751 - 2922809 | 37843.8 |
| anaerobic c4-dicarboxylate transporter | DXC44_12785 | Not Available | Negative | 2922977 - 2924275 | 45850.3 |
| nitronate monooxygenase | DXC44_12790 | Not Available | Positive | 2924517 - 2925467 | 34187.3 |
| sodium:solute symporter | DXC44_12795 | Not Available | Negative | 2925676 - 2927109 | 52090.3 |
| dihydrodipicolinate synthase family protein | DXC44_12800 | Not Available | Negative | 2927123 - 2928055 | 34028.5 |
| atp-binding cassette domain-containing protein | DXC44_12805 | Not Available | Negative | 2928218 - 2929666 | 55145.1 |
| diaminopimelate epimerase | DXC44_12810 | Not Available | Positive | 2930191 - 2930376 | 7205.79 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

