Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein | DXC44_12715 | Not Available | Negative | 2908495 - 2908887 | 14811.0 |
| dna-binding protein | DXC44_12720 | Not Available | Positive | 2909138 - 2909431 | 11277.9 |
| dna-binding protein | DXC44_12725 | Not Available | Positive | 2909471 - 2909776 | 11924.4 |
| rhum protein | DXC44_12730 | Not Available | Negative | 2909856 - 2910218 | 13607.6 |
| site-specific integrase | DXC44_12735 | Not Available | Negative | 2910230 - 2911465 | 47932.2 |
| duf4492 domain-containing protein | DXC44_12740 | Not Available | Positive | 2911927 - 2912145 | 8685.8 |
| cytochrome ubiquinol oxidase subunit i | DXC44_12745 | Not Available | Positive | 2912169 - 2913671 | 55113.9 |
| cytochrome d ubiquinol oxidase subunit ii | DXC44_12750 | Not Available | Positive | 2913826 - 2914971 | 42798.5 |
| 6-phosphogluconolactonase | DXC44_12755 | Not Available | Negative | 2915267 - 2915971 | 26417.3 |
| glucose-6-phosphate dehydrogenase | DXC44_12760 | Not Available | Negative | 2916033 - 2917541 | 58278.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

