Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydroorotate dehydrogenase electron transfer subunit | DXC44_12610 | Not Available | Positive | 2877145 - 2877924 | 28483.2 |
| dihydroorotate dehydrogenase | DXC44_12615 | Not Available | Positive | 2877912 - 2878823 | 32305.3 |
| trna (guanosine(37)-n1)-methyltransferase trmd | DXC44_12620 | Not Available | Negative | 2879189 - 2879863 | 25423.7 |
| dna ligase (nad(+)) liga | DXC44_12625 | Not Available | Positive | 2879962 - 2881959 | 75175.7 |
| 4-hydroxy-tetrahydrodipicolinate synthase | DXC44_12630 | Not Available | Positive | 2882061 - 2882954 | 32789.2 |
| Trna-arg | Not Available | Not Available | Positive | 2883554 - 2883630 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 2883648 - 2883724 | Not Available |
| patatin | DXC44_12650 | Not Available | Negative | 2883813 - 2886122 | 87693.7 |
| molecular chaperone htpg | DXC44_12655 | Not Available | Negative | 2886252 - 2888297 | 78182.3 |
| atp-dependent clp protease atp-binding subunit | DXC44_12660 | Not Available | Negative | 2888432 - 2890948 | 93935.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

