Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ctp synthase | DXC44_12395 | Not Available | Negative | 2835308 - 2836906 | 60081.3 |
| duf3078 domain-containing protein | DXC44_12400 | Not Available | Positive | 2837116 - 2838510 | 53456.6 |
| udp-n-acetyl glucosamine 2-epimerase | DXC44_12405 | Not Available | Negative | 2838610 - 2839698 | 40250.0 |
| trimeric intracellular cation channel family protein | DXC44_12410 | Not Available | Positive | 2839782 - 2840396 | 22186.8 |
| rna polymerase sigma factor | DXC44_12415 | Not Available | Positive | 2840555 - 2841058 | 19667.6 |
| biotin/lipoyl-binding protein | DXC44_12420 | Not Available | Positive | 2841248 - 2843023 | 66738.8 |
| duf1460 domain-containing protein | DXC44_12425 | Not Available | Positive | 2843149 - 2844027 | 33095.3 |
| monofunctional biosynthetic peptidoglycan transglycosylase | DXC44_12430 | Not Available | Negative | 2844005 - 2844721 | 27664.0 |
| ompa family protein | DXC44_12435 | Not Available | Negative | 2844850 - 2845569 | 24484.1 |
| mate family efflux transporter | DXC44_12440 | Not Available | Negative | 2845618 - 2846961 | 49290.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

