Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_12345 | Not Available | Negative | 2819219 - 2819488 | 9671.73 |
| hypothetical protein | DXC44_12350 | Not Available | Negative | 2819866 - 2820552 | 26757.2 |
| hypothetical protein | DXC44_12355 | Not Available | Negative | 2820743 - 2822965 | 86398.4 |
| transposase | DXC44_12360 | Not Available | Negative | 2823150 - 2824373 | 47528.3 |
| pyruvate, phosphate dikinase | DXC44_12365 | Not Available | Negative | 2824551 - 2827271 | 99780.5 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | DXC44_12370 | Not Available | Positive | 2827470 - 2828891 | 54018.2 |
| rlua family pseudouridine synthase | DXC44_12375 | Not Available | Positive | 2828936 - 2829862 | 35616.1 |
| s9 family peptidase | DXC44_12380 | Not Available | Negative | 2831070 - 2833175 | 79376.5 |
| hypothetical protein | DXC44_12385 | Not Available | Positive | 2833240 - 2833473 | 8750.31 |
| membrane protein insertase yidc | DXC44_12390 | Not Available | Negative | 2833403 - 2835268 | 70945.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

