Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| upf0104 family protein | DXC44_01035 | Not Available | Positive | 298999 - 300003 | 37225.6 |
| aminoacyl-histidine dipeptidase | DXC44_01040 | Not Available | Positive | 300000 - 301460 | 53173.6 |
| nucleoside deaminase | DXC44_01045 | Not Available | Negative | 301522 - 301989 | 16967.2 |
| transcriptional regulator | DXC44_01055 | Not Available | Positive | 302902 - 303117 | 7860.67 |
| alpha-2-macroglobulin | DXC44_01065 | Not Available | Positive | 303605 - 309283 | 213447.0 |
| hypothetical protein | DXC44_01070 | Not Available | Negative | 309344 - 309775 | 16916.7 |
| duf1573 domain-containing protein | DXC44_01075 | Not Available | Positive | 309906 - 310982 | 39212.1 |
| methylmalonyl co-a mutase-associated gtpase meab | DXC44_01080 | Not Available | Positive | 310985 - 312082 | 40361.6 |
| 6-phosphofructokinase | DXC44_01085 | Not Available | Negative | 312171 - 313151 | 35428.5 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | DXC44_01090 | Not Available | Negative | 313233 - 314099 | 32600.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

