Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pd-(d/e)xk nuclease family protein | DXC44_12160 | Not Available | Negative | 2779269 - 2782148 | 110970.0 |
| atp-dependent helicase | DXC44_12165 | Not Available | Negative | 2782148 - 2785324 | 122593.0 |
| atp-binding protein | DXC44_12170 | Not Available | Negative | 2785405 - 2786706 | 48986.9 |
| sigma-54-dependent fis family transcriptional regulator | DXC44_12175 | Not Available | Negative | 2786822 - 2788162 | 50137.7 |
| glutathione peroxidase | DXC44_12180 | Not Available | Positive | 2788280 - 2788819 | 20146.2 |
| hypothetical protein | DXC44_12185 | Not Available | Negative | 2788850 - 2789077 | 8602.18 |
| duf3990 domain-containing protein | DXC44_12190 | Not Available | Negative | 2789074 - 2789547 | 18414.9 |
| duf3791 domain-containing protein | DXC44_12195 | Not Available | Negative | 2789544 - 2789972 | 15954.4 |
| duf2442 domain-containing protein | DXC44_12200 | Not Available | Positive | 2790283 - 2790699 | 16026.2 |
| upxy family transcription antiterminator | DXC44_12210 | Not Available | Positive | 2791693 - 2792241 | 21158.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

