Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5'/3'-nucleotidase sure | DXC44_00985 | Not Available | Positive | 287997 - 288770 | 28332.7 |
| lipid-a-disaccharide synthase | DXC44_00990 | Not Available | Positive | 288767 - 289906 | 43067.6 |
| hypothetical protein | DXC44_00995 | Not Available | Positive | 289963 - 290697 | 27504.9 |
| phosphatidate cytidylyltransferase | DXC44_01000 | Not Available | Negative | 290689 - 291528 | 30824.3 |
| atp-dependent metallopeptidase ftsh/yme1/tma family protein | DXC44_01005 | Not Available | Negative | 291687 - 293693 | 74632.1 |
| ribosome silencing factor | DXC44_01010 | Not Available | Negative | 293711 - 294070 | 13409.9 |
| Trna-gln | Not Available | Not Available | Positive | 294391 - 294461 | Not Available |
| duf349 domain-containing protein | DXC44_01020 | Not Available | Negative | 294617 - 296425 | 70097.0 |
| magnesium transporter | DXC44_01025 | Not Available | Negative | 296686 - 298026 | 49694.8 |
| ribosomal rna small subunit methyltransferase a | DXC44_01030 | Not Available | Negative | 298058 - 298900 | 31940.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

