Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_11360 | Not Available | Negative | 2642136 - 2642513 | 14254.2 |
| hypothetical protein | DXC44_11365 | Not Available | Negative | 2642546 - 2642818 | 10458.1 |
| hypothetical protein | DXC44_11370 | Not Available | Negative | 2642829 - 2643131 | 11943.4 |
| hypothetical protein | DXC44_11375 | Not Available | Negative | 2643113 - 2643310 | 7413.72 |
| xre family transcriptional regulator | DXC44_11380 | Not Available | Positive | 2643680 - 2643994 | 11826.6 |
| type ii toxin-antitoxin system hipa family toxin | DXC44_11385 | Not Available | Positive | 2643991 - 2645271 | 47812.0 |
| hypothetical protein | DXC44_11390 | Not Available | Negative | 2645341 - 2645817 | 17928.8 |
| duf4313 domain-containing protein | DXC44_11400 | Not Available | Negative | 2646277 - 2646792 | 20065.7 |
| parb/repb/spo0j family partition protein | DXC44_11405 | Not Available | Negative | 2647434 - 2649188 | 66614.5 |
| hypothetical protein | DXC44_11410 | Not Available | Negative | 2649242 - 2649493 | 9694.62 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

