Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific dna-methyltransferase | DXC44_11260 | Not Available | Positive | 2625394 - 2626206 | 31659.1 |
| conjugative transposon protein tran | DXC44_11265 | Not Available | Positive | 2626216 - 2627067 | 32292.8 |
| hypothetical protein | DXC44_11270 | Not Available | Positive | 2627064 - 2627576 | 19154.3 |
| duf1566 domain-containing protein | DXC44_11275 | Not Available | Positive | 2627584 - 2628255 | 24402.6 |
| hypothetical protein | DXC44_11280 | Not Available | Positive | 2628260 - 2628742 | 18780.5 |
| type iv secretory system conjugative dna transfer family protein | DXC44_11285 | Not Available | Positive | 2628750 - 2630936 | 83061.4 |
| hypothetical protein | DXC44_11290 | Not Available | Positive | 2631165 - 2631929 | 29473.9 |
| nucleotidyl transferase abieii/abigii toxin family protein | DXC44_11295 | Not Available | Positive | 2631922 - 2632833 | 34701.7 |
| gnat family n-acetyltransferase | DXC44_11300 | Not Available | Positive | 2632893 - 2633342 | 17326.0 |
| helix-turn-helix domain-containing protein | DXC44_11305 | Not Available | Positive | 2633339 - 2634202 | 33194.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

