Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific integrase | DXC44_11155 | Not Available | Positive | 2606864 - 2607994 | 43311.7 |
| hypothetical protein | DXC44_11165 | Not Available | Positive | 2608252 - 2608896 | 24069.1 |
| dna-binding protein | DXC44_11170 | Not Available | Positive | 2609065 - 2609469 | 15856.3 |
| mobilization protein | DXC44_11175 | Not Available | Positive | 2609447 - 2610571 | 42340.5 |
| zf-chc2 and toprim domain-containing protein | DXC44_11180 | Not Available | Positive | 2610653 - 2611540 | 33898.5 |
| hypothetical protein | DXC44_11185 | Not Available | Positive | 2611782 - 2612231 | 16619.7 |
| duf4134 domain-containing protein | DXC44_11190 | Not Available | Positive | 2612233 - 2612559 | 11554.5 |
| duf4134 domain-containing protein | DXC44_11195 | Not Available | Positive | 2612634 - 2612999 | 12996.6 |
| duf4133 domain-containing protein | DXC44_11200 | Not Available | Positive | 2613012 - 2613308 | 10763.6 |
| duf87 domain-containing protein | DXC44_11205 | Not Available | Positive | 2613415 - 2616120 | 104150.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

