Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferredoxin | DXC44_11100 | Not Available | Positive | 2596801 - 2597331 | 19120.2 |
| cof-type had-iib family hydrolase | DXC44_11105 | Not Available | Negative | 2597321 - 2598127 | 30316.9 |
| dna recombination protein rmuc | DXC44_11110 | Not Available | Positive | 2598223 - 2599458 | 46960.8 |
| methyltransferase | DXC44_11115 | Not Available | Positive | 2599476 - 2600144 | 24548.2 |
| pas domain-containing sensor histidine kinase | DXC44_11120 | Not Available | Negative | 2600215 - 2601684 | 55121.1 |
| sensor protein kdpd | DXC44_11125 | Not Available | Negative | 2601697 - 2602824 | 42638.1 |
| duf5131 family protein | DXC44_11130 | Not Available | Negative | 2603004 - 2603771 | 29868.6 |
| nudix hydrolase | DXC44_11135 | Not Available | Positive | 2603977 - 2604531 | 21545.7 |
| class i sam-dependent methyltransferase | DXC44_11140 | Not Available | Negative | 2604638 - 2605426 | 29776.4 |
| n-acetyltransferase | DXC44_11145 | Not Available | Negative | 2605698 - 2606153 | 17405.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

