Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_00935 | Not Available | Negative | 274933 - 275619 | 25516.8 |
| duf2075 domain-containing protein | DXC44_00940 | Not Available | Positive | 275717 - 277135 | 53922.6 |
| alanine--trna ligase | DXC44_00945 | Not Available | Negative | 277457 - 280075 | 97427.7 |
| m23 family peptidase | DXC44_00950 | Not Available | Positive | 280215 - 281183 | 36405.9 |
| merr family transcriptional regulator | DXC44_00955 | Not Available | Positive | 281217 - 281564 | 13742.9 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | DXC44_00960 | Not Available | Negative | 281656 - 283926 | 86308.9 |
| lysm peptidoglycan-binding domain-containing protein | DXC44_00965 | Not Available | Negative | 284028 - 285290 | 47680.2 |
| hypothetical protein | DXC44_00970 | Not Available | Negative | 285295 - 286002 | 26895.4 |
| parb/repb/spo0j family partition protein | DXC44_00975 | Not Available | Negative | 286072 - 286968 | 33345.2 |
| para family protein | DXC44_00980 | Not Available | Negative | 286972 - 287739 | 28003.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

