Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| port family protein | DXC44_10690 | Not Available | Positive | 2506225 - 2506908 | 25699.9 |
| duf4293 family protein | DXC44_10695 | Not Available | Negative | 2506992 - 2507444 | 16883.5 |
| rna polymerase rpb6 | DXC44_10700 | Not Available | Negative | 2507693 - 2508028 | 12965.3 |
| outer membrane protein assembly factor bamd | DXC44_10705 | Not Available | Negative | 2508045 - 2508881 | 32450.3 |
| excinuclease abc subunit uvrb | DXC44_10710 | Not Available | Positive | 2509047 - 2511080 | 77729.7 |
| porin | DXC44_10715 | Not Available | Negative | 2511247 - 2512260 | 38664.1 |
| yigz family protein | DXC44_10720 | Not Available | Negative | 2512451 - 2513053 | 22823.7 |
| exonuclease | DXC44_10725 | Not Available | Negative | 2513087 - 2513575 | 18589.9 |
| patatin | DXC44_10730 | Not Available | Positive | 2513783 - 2515993 | 81953.5 |
| mannonate dehydratase | DXC44_10735 | Not Available | Negative | 2515976 - 2517154 | 44693.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

