Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna methyltransferase | DXC44_10590 | Not Available | Positive | 2481092 - 2481847 | 27939.9 |
| hypothetical protein | DXC44_10595 | Not Available | Negative | 2481919 - 2482242 | 12222.7 |
| duf4296 domain-containing protein | DXC44_10600 | Not Available | Negative | 2482258 - 2483232 | 37267.1 |
| lipoprotein signal peptidase | DXC44_10605 | Not Available | Negative | 2483236 - 2483874 | 24077.7 |
| trar/dksa family transcriptional regulator | DXC44_10610 | Not Available | Negative | 2483984 - 2484364 | 14347.1 |
| isoleucine--trna ligase | DXC44_10615 | Not Available | Negative | 2484388 - 2487876 | 132133.0 |
| arac family transcriptional regulator | DXC44_10620 | Not Available | Negative | 2488085 - 2488918 | 32094.1 |
| peptidase | DXC44_10625 | Not Available | Negative | 2489418 - 2490236 | 29750.7 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | DXC44_10630 | Not Available | Negative | 2490490 - 2491164 | 23919.2 |
| sugar kinase | DXC44_10635 | Not Available | Negative | 2491274 - 2492296 | 37020.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

