Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DXC44_10385 | Not Available | Negative | 2432347 - 2435475 | 113843.0 |
| methylmalonyl-coa carboxyltransferase | DXC44_10390 | Not Available | Positive | 2435482 - 2435895 | 15193.4 |
| putative transporter | DXC44_10395 | Not Available | Positive | 2436021 - 2437709 | 60888.9 |
| hypothetical protein | DXC44_10400 | Not Available | Positive | 2437729 - 2438286 | 21451.8 |
| hypothetical protein | DXC44_10405 | Not Available | Positive | 2438313 - 2438522 | 7700.39 |
| ribonucleoside-diphosphate reductase subunit alpha | DXC44_10410 | Not Available | Positive | 2438925 - 2441444 | 95735.6 |
| ribonucleotide-diphosphate reductase subunit beta | DXC44_10415 | Not Available | Positive | 2441607 - 2442656 | 41347.9 |
| methylenetetrahydrofolate reductase | DXC44_10420 | Not Available | Negative | 2442747 - 2443700 | 35944.1 |
| tonb-dependent receptor | DXC44_10425 | Not Available | Negative | 2443997 - 2446300 | 85921.1 |
| hypothetical protein | DXC44_10430 | Not Available | Negative | 2446409 - 2446789 | 13813.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

