Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ion transporter | DXC44_10230 | Not Available | Positive | 2393902 - 2394759 | 32741.9 |
| lytic transglycosylase domain-containing protein | DXC44_10235 | Not Available | Negative | 2394785 - 2395783 | 37375.8 |
| arac family transcriptional regulator | DXC44_10240 | Not Available | Negative | 2395791 - 2396711 | 35143.8 |
| duf4251 domain-containing protein | DXC44_10245 | Not Available | Negative | 2396842 - 2397339 | 18510.1 |
| rhamnulose-1-phosphate aldolase | DXC44_10250 | Not Available | Negative | 2397548 - 2398357 | 30253.7 |
| l-rhamnose/proton symporter rhat | DXC44_10255 | Not Available | Negative | 2398443 - 2399462 | 36173.2 |
| l-rhamnose isomerase | DXC44_10260 | Not Available | Negative | 2399555 - 2400811 | 47536.4 |
| rhamnulokinase | DXC44_10265 | Not Available | Negative | 2400851 - 2402329 | 55006.8 |
| arginine repressor | DXC44_10270 | Not Available | Positive | 2402636 - 2403112 | 17529.3 |
| n-acetyltransferase | DXC44_10275 | Not Available | Positive | 2403135 - 2403692 | 20661.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

