Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susd/ragb family nutrient-binding outer membrane lipoprotein | DXC44_10180 | Not Available | Positive | 2376999 - 2378768 | 66868.9 |
| endonuclease | DXC44_10185 | Not Available | Positive | 2378812 - 2379657 | 31930.9 |
| glycoside hydrolase family 97 protein | DXC44_10190 | Not Available | Positive | 2379845 - 2381860 | 75845.2 |
| mfs transporter | DXC44_10195 | Not Available | Positive | 2381984 - 2383282 | 47974.8 |
| glycosidase | DXC44_10200 | Not Available | Positive | 2383315 - 2384316 | 37625.8 |
| glycosyl hydrolase family 109 protein 2 | DXC44_10205 | Not Available | Positive | 2384775 - 2386016 | 47387.7 |
| duf4974 domain-containing protein | DXC44_10210 | Not Available | Negative | 2386139 - 2387149 | 38656.1 |
| rna polymerase sigma-70 factor | DXC44_10215 | Not Available | Negative | 2387146 - 2387673 | 20776.9 |
| tonb-dependent receptor | DXC44_10220 | Not Available | Negative | 2387728 - 2390295 | 97456.0 |
| duf4981 domain-containing protein | DXC44_10225 | Not Available | Negative | 2390691 - 2393786 | 117529.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

