Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| general stress protein | DXC44_10125 | Not Available | Negative | 2361680 - 2362087 | 15299.3 |
| arac family transcriptional regulator | DXC44_10130 | Not Available | Negative | 2362161 - 2362976 | 31074.5 |
| hypothetical protein | DXC44_10135 | Not Available | Negative | 2362985 - 2363671 | 25460.4 |
| hypothetical protein | DXC44_10140 | Not Available | Positive | 2363831 - 2364526 | 26709.6 |
| glycoside hydrolase family 92 protein | DXC44_10145 | Not Available | Positive | 2364620 - 2366842 | 83542.0 |
| rna polymerase sigma-70 factor | DXC44_10150 | Not Available | Positive | 2367047 - 2367622 | 22518.4 |
| duf4974 domain-containing protein | DXC44_10155 | Not Available | Positive | 2367651 - 2368643 | 38023.8 |
| glycoside hydrolase family 92 protein | DXC44_10160 | Not Available | Positive | 2368661 - 2370943 | 86472.6 |
| glycoside hydrolase family 92 protein | DXC44_10165 | Not Available | Positive | 2370973 - 2373285 | 87854.8 |
| susc/raga family tonb-linked outer membrane protein | DXC44_10175 | Not Available | Positive | 2373574 - 2376975 | 124970.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

