Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | DXC44_00835 | Not Available | Positive | 256000 - 256314 | 11454.8 |
| hypothetical protein | DXC44_00840 | Not Available | Positive | 256350 - 256685 | 12878.8 |
| plasmid pria4b orf-3 family protein | DXC44_00845 | Not Available | Positive | 256866 - 258425 | 61111.4 |
| hypothetical protein | DXC44_00850 | Not Available | Negative | 258540 - 258761 | 8312.45 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | DXC44_00855 | Not Available | Negative | 258823 - 259251 | 16199.1 |
| metal abc transporter permease | DXC44_00860 | Not Available | Negative | 259235 - 260086 | 31196.3 |
| phospholipase | DXC44_00865 | Not Available | Negative | 260138 - 260557 | 15918.1 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | DXC44_00870 | Not Available | Negative | 260562 - 261788 | 45902.5 |
| class i fructose-bisphosphate aldolase | DXC44_00875 | Not Available | Negative | 261950 - 263002 | 38036.4 |
| 2,3-diphosphoglycerate-dependent phosphoglycerate mutase | DXC44_00880 | Not Available | Negative | 263154 - 263915 | 29056.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

