Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4141 domain-containing protein | DXC44_09920 | Not Available | Positive | 2330084 - 2330713 | 23832.5 |
| conjugative transposon protein traj | DXC44_09925 | Not Available | Positive | 2330716 - 2331729 | 37339.7 |
| conjugative transposon protein trak | DXC44_09930 | Not Available | Positive | 2331921 - 2332544 | 23968.5 |
| duf3989 domain-containing protein | DXC44_09935 | Not Available | Positive | 2332541 - 2332840 | 10933.5 |
| conjugative transposon protein tram | DXC44_09940 | Not Available | Positive | 2332791 - 2334098 | 47988.2 |
| conjugative transposon protein tran | DXC44_09945 | Not Available | Positive | 2334148 - 2335062 | 34780.2 |
| conjugal transfer protein trao | DXC44_09950 | Not Available | Positive | 2335059 - 2335646 | 21820.1 |
| duf3872 domain-containing protein | DXC44_09955 | Not Available | Positive | 2335668 - 2336129 | 17766.8 |
| glycoside hydrolase | DXC44_09960 | Not Available | Positive | 2336126 - 2336605 | 18657.0 |
| hypothetical protein | DXC44_09965 | Not Available | Negative | 2336674 - 2337828 | 42486.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

