Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3408 domain-containing protein | DXC44_09870 | Not Available | Positive | 2322174 - 2322623 | 17039.2 |
| duf4122 domain-containing protein | DXC44_09875 | Not Available | Positive | 2322611 - 2323279 | 25422.3 |
| hypothetical protein | DXC44_09880 | Not Available | Negative | 2323746 - 2324885 | 44564.9 |
| hypothetical protein | DXC44_09885 | Not Available | Negative | 2324918 - 2325928 | 38642.1 |
| hypothetical protein | DXC44_09890 | Not Available | Positive | 2325973 - 2326158 | 7098.15 |
| hypothetical protein | DXC44_09895 | Not Available | Positive | 2326201 - 2326383 | 7402.18 |
| duf4134 domain-containing protein | DXC44_09900 | Not Available | Positive | 2326485 - 2326871 | 13706.8 |
| duf4133 domain-containing protein | DXC44_09905 | Not Available | Positive | 2326877 - 2327203 | 12291.4 |
| trag family conjugative transposon atpase | DXC44_09910 | Not Available | Positive | 2327200 - 2329734 | 97781.5 |
| duf3876 domain-containing protein | DXC44_09915 | Not Available | Positive | 2329731 - 2330087 | 13252.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

