Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_09655 | Not Available | Negative | 2281871 - 2282089 | 8500.69 |
| nerd domain-containing protein | DXC44_09660 | Not Available | Negative | 2282213 - 2282764 | 20896.1 |
| atp-binding protein | DXC44_09665 | Not Available | Negative | 2282757 - 2283794 | 39279.2 |
| hypothetical protein | DXC44_09680 | Not Available | Negative | 2284836 - 2285810 | 37647.9 |
| type vi secretion system contractile sheath protein tssc | DXC44_09690 | Not Available | Negative | 2290346 - 2291713 | 51642.7 |
| hypothetical protein | DXC44_09695 | Not Available | Negative | 2291719 - 2292192 | 17395.3 |
| hypothetical protein | DXC44_09700 | Not Available | Negative | 2292238 - 2293596 | 52267.1 |
| type iv secretion protein rhs | DXC44_09705 | Not Available | Negative | 2293608 - 2295416 | 66001.2 |
| type vi secretion system needle protein hcp | DXC44_09710 | Not Available | Negative | 2295534 - 2295932 | 15172.8 |
| atp-dependent clp protease atp-binding subunit | DXC44_09715 | Not Available | Positive | 2296199 - 2298676 | 91904.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

