Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_09525 | Not Available | Negative | 2258423 - 2258890 | 16027.4 |
| hypothetical protein | DXC44_09530 | Not Available | Positive | 2259125 - 2259358 | 9045.06 |
| hypothetical protein | DXC44_09535 | Not Available | Positive | 2259355 - 2259636 | 10827.6 |
| hypothetical protein | DXC44_09545 | Not Available | Positive | 2261132 - 2263930 | 104677.0 |
| ompa family protein | DXC44_09550 | Not Available | Positive | 2263935 - 2265125 | 45025.4 |
| xre family transcriptional regulator | DXC44_09565 | Not Available | Negative | 2266525 - 2266725 | 7503.35 |
| dna (cytosine-5-)-methyltransferase | DXC44_09570 | Not Available | Negative | 2266882 - 2268273 | 53463.5 |
| dna (cytosine-5-)-methyltransferase | DXC44_09575 | Not Available | Negative | 2268278 - 2269285 | 38037.6 |
| ngopii family restriction endonuclease | DXC44_09580 | Not Available | Negative | 2269285 - 2270142 | 32678.3 |
| dna mismatch endonuclease vsr | DXC44_09585 | Not Available | Negative | 2270198 - 2270707 | 20269.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

