Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_09420 | Not Available | Positive | 2226733 - 2228094 | 49079.2 |
| rna polymerase sigma-70 factor | DXC44_09425 | Not Available | Negative | 2228153 - 2228713 | 21971.5 |
| duf5009 domain-containing protein | DXC44_09430 | Not Available | Negative | 2228738 - 2229829 | 40550.8 |
| beta-hexosaminidase | DXC44_09435 | Not Available | Positive | 2230030 - 2232453 | 91060.5 |
| gamma-carboxymuconolactone decarboxylase | DXC44_09440 | Not Available | Positive | 2232687 - 2233517 | 31073.9 |
| hypothetical protein | DXC44_09445 | Not Available | Positive | 2233652 - 2234866 | 45675.3 |
| phosphoglycerate kinase | DXC44_09450 | Not Available | Negative | 2234941 - 2236194 | 44034.9 |
| fecr family protein | DXC44_09455 | Not Available | Positive | 2236418 - 2237344 | 35762.9 |
| susc/raga family tonb-linked outer membrane protein | DXC44_09460 | Not Available | Positive | 2237496 - 2240912 | 125439.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DXC44_09465 | Not Available | Positive | 2240931 - 2242544 | 60320.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

