Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tlpa family protein disulfide reductase | DXC44_09370 | Not Available | Negative | 2212429 - 2213805 | 51112.2 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_09375 | Not Available | Negative | 2213817 - 2215208 | 53185.5 |
| susc/raga family tonb-linked outer membrane protein | DXC44_09380 | Not Available | Negative | 2215227 - 2218721 | 130488.0 |
| fecr family protein | DXC44_09385 | Not Available | Negative | 2218779 - 2219858 | 41259.7 |
| rna polymerase subunit sigma-70 | DXC44_09390 | Not Available | Negative | 2219931 - 2220497 | 22576.3 |
| Trna-his | Not Available | Not Available | Positive | 2220573 - 2220649 | Not Available |
| capa family protein | DXC44_09400 | Not Available | Negative | 2220725 - 2221798 | 40860.5 |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold | DXC44_09405 | Not Available | Negative | 2222655 - 2223536 | 31535.7 |
| signal recognition particle protein | DXC44_09410 | Not Available | Negative | 2223650 - 2224972 | 48854.7 |
| mate family efflux transporter | DXC44_09415 | Not Available | Negative | 2225071 - 2226393 | 48726.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

