Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endonuclease iii | DXC44_09320 | Not Available | Positive | 2202070 - 2202714 | 24101.6 |
| mbl fold metallo-hydrolase | DXC44_09325 | Not Available | Negative | 2202709 - 2203485 | 29140.4 |
| udp-n-acetylmuramate dehydrogenase | DXC44_09330 | Not Available | Negative | 2203494 - 2204507 | 37617.2 |
| duf4348 domain-containing protein | DXC44_09335 | Not Available | Negative | 2204519 - 2205379 | 33508.7 |
| phenylalanine--trna ligase subunit alpha | DXC44_09340 | Not Available | Positive | 2205491 - 2206525 | 38981.6 |
| mfs transporter | DXC44_09345 | Not Available | Positive | 2206653 - 2207849 | 43916.7 |
| hypothetical protein | DXC44_09350 | Not Available | Negative | 2207846 - 2208988 | 43009.4 |
| 4-amino-4-deoxychorismate lyase | DXC44_09355 | Not Available | Negative | 2209078 - 2209671 | 22693.3 |
| aminodeoxychorismate synthase component i | DXC44_09360 | Not Available | Negative | 2209655 - 2210638 | 37520.0 |
| ahpc/tsa family protein | DXC44_09365 | Not Available | Negative | 2211243 - 2212421 | 44862.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

