Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | DXC44_09170 | Not Available | Negative | 2165643 - 2166473 | 31555.8 |
| tonb family protein | DXC44_09175 | Not Available | Negative | 2167060 - 2167746 | 25590.7 |
| transcription-repair coupling factor | DXC44_09180 | Not Available | Negative | 2168011 - 2171376 | 127080.0 |
| duf418 domain-containing protein | DXC44_09185 | Not Available | Positive | 2171484 - 2172668 | 45032.6 |
| tetratricopeptide repeat protein | DXC44_09190 | Not Available | Positive | 2172730 - 2174907 | 86032.4 |
| hypothetical protein | DXC44_09195 | Not Available | Negative | 2174899 - 2175720 | 31598.5 |
| aspartate-alanine antiporter | DXC44_09200 | Not Available | Positive | 2175846 - 2177546 | 61072.4 |
| bifunctional aspartate transaminase/aspartate 4-decarboxylase | DXC44_09205 | Not Available | Positive | 2177566 - 2179206 | 62633.3 |
| peptidase s41 | DXC44_09210 | Not Available | Positive | 2179355 - 2180752 | 52241.7 |
| copper homeostasis protein | DXC44_09215 | Not Available | Positive | 2180909 - 2181397 | 17145.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

