Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_09020 | Not Available | Negative | 2133965 - 2135749 | 69350.0 |
| amino acid-binding protein | DXC44_09025 | Not Available | Negative | 2135985 - 2136401 | 15402.8 |
| phenylacetate--coa ligase | DXC44_09030 | Not Available | Negative | 2136415 - 2137716 | 48582.5 |
| pyridoxal phosphate-dependent aminotransferase | DXC44_09035 | Not Available | Negative | 2137811 - 2139115 | 48672.3 |
| indolepyruvate oxidoreductase subunit beta | DXC44_09040 | Not Available | Negative | 2139120 - 2139701 | 21245.8 |
| indolepyruvate ferredoxin oxidoreductase | DXC44_09045 | Not Available | Negative | 2139698 - 2141314 | 58792.4 |
| amidohydrolase | DXC44_09050 | Not Available | Negative | 2141338 - 2142099 | 28481.8 |
| atp-dependent helicase | DXC44_09055 | Not Available | Negative | 2142329 - 2144731 | 91151.9 |
| aaa family atpase | DXC44_09060 | Not Available | Negative | 2144871 - 2146439 | 60498.0 |
| hypothetical protein | DXC44_09065 | Not Available | Negative | 2146516 - 2147328 | 30773.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

