Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m20/m25/m40 family metallo-hydrolase | DXC44_00735 | Not Available | Negative | 231952 - 232971 | 38293.7 |
| ribosome small subunit-dependent gtpase a | DXC44_00740 | Not Available | Negative | 232985 - 233917 | 35098.8 |
| ribosome-recycling factor | DXC44_00745 | Not Available | Negative | 234038 - 234598 | 20738.2 |
| aaa family atpase | DXC44_00750 | Not Available | Positive | 234837 - 236417 | 61243.0 |
| histidine phosphatase family protein | DXC44_00755 | Not Available | Positive | 236819 - 237337 | 19475.5 |
| duf4450 domain-containing protein | DXC44_00760 | Not Available | Negative | 237360 - 240617 | 121346.0 |
| hypothetical protein | DXC44_00765 | Not Available | Negative | 240642 - 242750 | 80024.3 |
| glycoside hydrolase family 88 protein | DXC44_00770 | Not Available | Negative | 242805 - 244043 | 47184.2 |
| ump kinase | DXC44_00775 | Not Available | Negative | 244301 - 245011 | 25575.2 |
| mate family efflux transporter | DXC44_00780 | Not Available | Negative | 245050 - 246375 | 48941.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

