Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yccf domain-containing protein | DXC44_08970 | Not Available | Negative | 2120208 - 2120576 | 13206.2 |
| glycoside hydrolase family 25 protein | DXC44_08975 | Not Available | Negative | 2120622 - 2121488 | 33936.9 |
| diphosphate--fructose-6-phosphate 1-phosphotransferase | DXC44_08980 | Not Available | Negative | 2121614 - 2123257 | 59907.0 |
| hypothetical protein | DXC44_08985 | Not Available | Positive | 2123408 - 2123656 | 9206.38 |
| acyltransferase | DXC44_08990 | Not Available | Positive | 2123667 - 2124224 | 21350.4 |
| alpha-1,3-galactosidase b | DXC44_08995 | Not Available | Negative | 2124309 - 2126126 | 68988.8 |
| xanthan lyase | DXC44_09000 | Not Available | Positive | 2126209 - 2129079 | 106937.0 |
| hypothetical protein | DXC44_09005 | Not Available | Positive | 2129170 - 2129487 | 12244.6 |
| ygiq family radical sam protein | DXC44_09010 | Not Available | Positive | 2129539 - 2131428 | 72335.1 |
| sodium-translocating pyrophosphatase | DXC44_09015 | Not Available | Positive | 2131691 - 2133895 | 77038.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

