Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator | DXC44_08865 | Not Available | Negative | 2097725 - 2098081 | 13485.5 |
| hybrid sensor histidine kinase/response regulator | DXC44_08870 | Not Available | Positive | 2098225 - 2100075 | 71115.3 |
| endonuclease | DXC44_08875 | Not Available | Positive | 2100079 - 2101140 | 40748.7 |
| hybrid sensor histidine kinase/response regulator | DXC44_08880 | Not Available | Negative | 2101145 - 2102284 | 42240.7 |
| sdr family oxidoreductase | DXC44_08885 | Not Available | Negative | 2102294 - 2103232 | 35475.6 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | DXC44_08890 | Not Available | Positive | 2103353 - 2104177 | 29140.4 |
| [acyl-carrier-protein] s-malonyltransferase | DXC44_08895 | Not Available | Positive | 2104304 - 2105191 | 31271.7 |
| phospholipase | DXC44_08900 | Not Available | Positive | 2105317 - 2106102 | 29317.4 |
| alpha-amylase | DXC44_08905 | Not Available | Positive | 2106119 - 2107816 | 64741.7 |
| hpaii family restriction endonuclease | DXC44_08910 | Not Available | Negative | 2107945 - 2109033 | 41342.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

