Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xylose isomerase | DXC44_08715 | Not Available | Negative | 2065487 - 2066803 | 49038.9 |
| carbohydrate kinase | DXC44_08720 | Not Available | Negative | 2066896 - 2068389 | 53461.6 |
| nudix hydrolase | DXC44_08725 | Not Available | Negative | 2068561 - 2069295 | 28586.5 |
| response regulator | DXC44_08730 | Not Available | Positive | 2069651 - 2070016 | 14101.4 |
| sugar transferase | DXC44_08735 | Not Available | Positive | 2070023 - 2071198 | 44978.8 |
| hypothetical protein | DXC44_08740 | Not Available | Positive | 2071235 - 2072098 | 32630.1 |
| hypothetical protein | DXC44_08745 | Not Available | Positive | 2072104 - 2074251 | 82551.6 |
| o-antigen ligase domain-containing protein | DXC44_08750 | Not Available | Positive | 2074255 - 2075715 | 54842.9 |
| glycosyltransferase family 2 protein | DXC44_08755 | Not Available | Positive | 2075696 - 2076601 | 34456.6 |
| glycosyltransferase | DXC44_08760 | Not Available | Positive | 2076598 - 2077722 | 43036.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

