Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deda family protein | DXC44_08665 | Not Available | Positive | 2053632 - 2054258 | 23001.3 |
| thiol peroxidase | DXC44_08670 | Not Available | Positive | 2054327 - 2054830 | 17976.7 |
| gdp-l-fucose synthase | DXC44_08675 | Not Available | Negative | 2055025 - 2056101 | 40525.7 |
| gdp-mannose 4,6-dehydratase | DXC44_08680 | Not Available | Negative | 2056101 - 2057183 | 41218.5 |
| mannose-1-phosphate guanylyltransferase | DXC44_08685 | Not Available | Negative | 2057359 - 2058423 | 40506.4 |
| undecaprenyl-phosphate glucose phosphotransferase | DXC44_08690 | Not Available | Positive | 2058537 - 2059940 | 54181.0 |
| glucose-1-phosphate thymidylyltransferase | DXC44_08695 | Not Available | Positive | 2059976 - 2060863 | 32737.7 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | DXC44_08700 | Not Available | Positive | 2060863 - 2061432 | 21738.7 |
| chain-length determining protein | DXC44_08705 | Not Available | Negative | 2061608 - 2062747 | 41468.8 |
| capsule biosynthesis protein | DXC44_08710 | Not Available | Negative | 2062755 - 2065247 | 92296.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

