Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtpase hflx | DXC44_00690 | Not Available | Positive | 215150 - 216403 | 47629.5 |
| duf4954 family protein | DXC44_00695 | Not Available | Positive | 216417 - 218402 | 74509.4 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 219264 - 219372 | Not Available |
| coce/nond family hydrolase | DXC44_00700 | Not Available | Negative | 218550 - 220457 | 73940.0 |
| fumarate hydratase | DXC44_00705 | Not Available | Positive | 220596 - 222239 | 60487.7 |
| alpha-n-acetylglucosaminidase | DXC44_00710 | Not Available | Positive | 222342 - 224498 | 82818.5 |
| amino acid permease | DXC44_00715 | Not Available | Negative | 224671 - 226329 | 59758.4 |
| tolc family protein | DXC44_00720 | Not Available | Negative | 226418 - 227737 | 50562.7 |
| acrb/acrd/acrf family protein | DXC44_00725 | Not Available | Negative | 227734 - 230769 | 112056.0 |
| efflux rnd transporter periplasmic adaptor subunit | DXC44_00730 | Not Available | Negative | 230789 - 231865 | 39658.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

