Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutaminase | DXC44_08415 | Not Available | Positive | 1998114 - 1999076 | 34758.9 |
| copper homeostasis protein cutc | DXC44_08420 | Not Available | Positive | 1999377 - 2000240 | 31395.5 |
| transglutaminase domain-containing protein | DXC44_08425 | Not Available | Negative | 2000335 - 2002998 | 99209.0 |
| two pore domain potassium channel family protein | DXC44_08430 | Not Available | Negative | 2003080 - 2003814 | 28208.9 |
| amino acid permease | DXC44_08435 | Not Available | Positive | 2003981 - 2005558 | 56536.8 |
| sensor histidine kinase | DXC44_08440 | Not Available | Positive | 2005775 - 2008048 | 87704.5 |
| na+/h+ antiporter nhaa | DXC44_08445 | Not Available | Negative | 2008051 - 2009391 | 48637.6 |
| elongation factor 4 | DXC44_08450 | Not Available | Negative | 2009524 - 2011305 | 66375.4 |
| duf4276 family protein | DXC44_08455 | Not Available | Negative | 2011425 - 2012087 | 25229.3 |
| duf2813 domain-containing protein | DXC44_08460 | Not Available | Negative | 2012094 - 2013182 | 41425.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

