Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| electron transport complex subunit e | DXC44_08365 | Not Available | Negative | 1987461 - 1988045 | 20626.5 |
| rnfabcdge type electron transport complex subunit g | DXC44_08370 | Not Available | Negative | 1988060 - 1988854 | 27098.0 |
| rnfabcdge type electron transport complex subunit d | DXC44_08375 | Not Available | Negative | 1988851 - 1989840 | 35388.6 |
| electron transport complex subunit rsxc | DXC44_08380 | Not Available | Negative | 1989855 - 1991192 | 47118.8 |
| fe-s cluster domain-containing protein | DXC44_08385 | Not Available | Negative | 1991232 - 1992185 | 32597.8 |
| rsec/mucc family positive regulator of sigma(e) | DXC44_08390 | Not Available | Negative | 1992206 - 1992634 | 15752.6 |
| threonine ammonia-lyase | DXC44_08395 | Not Available | Negative | 1992813 - 1994009 | 42410.4 |
| dmt family transporter | DXC44_08400 | Not Available | Negative | 1994206 - 1995120 | 33454.3 |
| mfs transporter | DXC44_08405 | Not Available | Negative | 1995152 - 1996342 | 43394.0 |
| glutamate decarboxylase | DXC44_08410 | Not Available | Positive | 1996600 - 1998048 | 54702.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

