Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s9 family peptidase | DXC44_08315 | Not Available | Positive | 1975287 - 1977518 | 84454.7 |
| hypothetical protein | DXC44_08320 | Not Available | Positive | 1977689 - 1979176 | 56288.0 |
| hypothetical protein | DXC44_08325 | Not Available | Positive | 1979235 - 1979615 | 14324.3 |
| hypothetical protein | DXC44_08330 | Not Available | Positive | 1979587 - 1979892 | 11612.0 |
| aspartate ammonia-lyase | DXC44_08335 | Not Available | Negative | 1979836 - 1981269 | 52225.3 |
| yitt family protein | DXC44_08340 | Not Available | Negative | 1981533 - 1982423 | 32573.4 |
| lruc domain-containing protein | DXC44_08345 | Not Available | Negative | 1982564 - 1984441 | 71350.9 |
| udp-glucose 4-epimerase gale | DXC44_08350 | Not Available | Negative | 1984735 - 1985769 | 37984.7 |
| hypothetical protein | DXC44_08355 | Not Available | Negative | 1985802 - 1986698 | 33993.3 |
| electron transport complex subunit rsxa | DXC44_08360 | Not Available | Negative | 1986840 - 1987442 | 21298.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

