Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fucose isomerase | DXC44_08265 | Not Available | Positive | 1963137 - 1964372 | 46189.3 |
| duf4494 domain-containing protein | DXC44_08270 | Not Available | Positive | 1964468 - 1964950 | 18209.6 |
| yggs family pyridoxal phosphate-dependent enzyme | DXC44_08275 | Not Available | Positive | 1964984 - 1965652 | 25398.4 |
| dihydroorotate dehydrogenase-like protein | DXC44_08280 | Not Available | Positive | 1965666 - 1966640 | 35625.3 |
| long-chain fatty acid--coa ligase | DXC44_08285 | Not Available | Positive | 1966810 - 1968468 | 62504.7 |
| hypothetical protein | DXC44_08290 | Not Available | Positive | 1968722 - 1970107 | 48513.0 |
| duf3943 domain-containing protein | DXC44_08295 | Not Available | Positive | 1970146 - 1971618 | 56314.4 |
| crp/fnr family transcriptional regulator | DXC44_08300 | Not Available | Negative | 1971615 - 1972193 | 22566.6 |
| peptidase | DXC44_08305 | Not Available | Positive | 1972336 - 1973934 | 60242.0 |
| aminopeptidase | DXC44_08310 | Not Available | Positive | 1973966 - 1975156 | 45290.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

