Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding cassette domain-containing protein | DXC44_08215 | Not Available | Positive | 1953015 - 1953770 | 28405.2 |
| aspartate kinase | DXC44_08220 | Not Available | Positive | 1953878 - 1955197 | 49296.1 |
| diaminopimelate decarboxylase | DXC44_08225 | Not Available | Positive | 1955305 - 1956465 | 42749.4 |
| hypothetical protein | DXC44_08230 | Not Available | Negative | 1956530 - 1957036 | 19772.7 |
| glycosyltransferase | DXC44_08235 | Not Available | Positive | 1957241 - 1958398 | 44788.3 |
| antibiotic biosynthesis monooxygenase | DXC44_08240 | Not Available | Positive | 1958447 - 1958722 | 10430.6 |
| duf340 domain-containing protein | DXC44_08245 | Not Available | Positive | 1959279 - 1959566 | 10298.2 |
| lysine exporter lyso family protein | DXC44_08250 | Not Available | Positive | 1959556 - 1960176 | 22075.5 |
| abc transporter permease | DXC44_08255 | Not Available | Negative | 1960523 - 1961767 | 46918.6 |
| pyridoxal phosphate-dependent aminotransferase | DXC44_08260 | Not Available | Negative | 1961769 - 1962971 | 44969.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

