Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m48 family peptidase | DXC44_08055 | Not Available | Negative | 1924317 - 1925021 | 27278.5 |
| duf2807 domain-containing protein | DXC44_08060 | Not Available | Positive | 1925128 - 1925859 | 25906.5 |
| hypothetical protein | DXC44_08065 | Not Available | Negative | 1926057 - 1926536 | 18339.8 |
| rna polymerase sigma factor | DXC44_08070 | Not Available | Negative | 1926526 - 1927035 | 20170.3 |
| acetylglutamate kinase | DXC44_08075 | Not Available | Negative | 1927099 - 1927872 | 27207.2 |
| biosynthetic arginine decarboxylase | DXC44_08080 | Not Available | Negative | 1927877 - 1929769 | 71518.0 |
| shikimate kinase | DXC44_08085 | Not Available | Negative | 1929811 - 1930338 | 20453.7 |
| type i dna topoisomerase | DXC44_08090 | Not Available | Negative | 1930335 - 1932773 | 91403.2 |
| tonb-dependent receptor | DXC44_08095 | Not Available | Negative | 1932895 - 1934592 | 64295.7 |
| tetratricopeptide repeat protein | DXC44_08100 | Not Available | Negative | 1934616 - 1937519 | 111179.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

