Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mobilization protein | DXC44_00635 | Not Available | Negative | 201907 - 203430 | 59111.0 |
| hypothetical protein | DXC44_00640 | Not Available | Negative | 203657 - 204769 | 42161.2 |
| helicase | DXC44_00650 | Not Available | Negative | 204950 - 206098 | 42464.7 |
| helix-turn-helix domain-containing protein | DXC44_00655 | Not Available | Negative | 206104 - 206478 | 14089.8 |
| transposase | DXC44_00660 | Not Available | Negative | 206661 - 207509 | 33095.8 |
| site-specific integrase | DXC44_00665 | Not Available | Negative | 207736 - 208854 | 43568.0 |
| hypothetical protein | DXC44_00670 | Not Available | Negative | 208811 - 209026 | 8322.87 |
| helix-turn-helix domain-containing protein | DXC44_00675 | Not Available | Negative | 208986 - 209927 | 36479.2 |
| tonb-dependent receptor | DXC44_00680 | Not Available | Positive | 210455 - 213448 | 110952.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_00685 | Not Available | Positive | 213472 - 215058 | 58737.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

