Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease hii | DXC44_07905 | Not Available | Negative | 1888548 - 1889153 | 22930.4 |
| tetratricopeptide repeat protein | DXC44_07910 | Not Available | Positive | 1889255 - 1890880 | 63066.8 |
| tonb-dependent receptor | DXC44_07915 | Not Available | Positive | 1891104 - 1894232 | 116546.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_07920 | Not Available | Positive | 1894253 - 1895770 | 57946.4 |
| duf340 domain-containing protein | DXC44_07925 | Not Available | Positive | 1895885 - 1896166 | 10217.2 |
| lysine exporter lyso family protein | DXC44_07930 | Not Available | Positive | 1896163 - 1896765 | 21649.9 |
| duf4981 domain-containing protein | DXC44_07935 | Not Available | Positive | 1896779 - 1899955 | 121480.0 |
| glycoside hydrolase | DXC44_07940 | Not Available | Positive | 1899973 - 1901907 | 72860.6 |
| gnat family n-acetyltransferase | DXC44_07945 | Not Available | Positive | 1902066 - 1902488 | 16247.6 |
| hypothetical protein | DXC44_07950 | Not Available | Negative | 1902599 - 1902799 | 7774.93 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

