Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-amylase | DXC44_07855 | Not Available | Positive | 1874450 - 1877029 | 97643.7 |
| hypothetical protein | DXC44_07860 | Not Available | Negative | 1877200 - 1878180 | 34851.3 |
| peptidase | DXC44_07865 | Not Available | Negative | 1878199 - 1880058 | 67222.0 |
| hypothetical protein | DXC44_07870 | Not Available | Negative | 1880300 - 1881487 | 44426.8 |
| duf3109 family protein | DXC44_07875 | Not Available | Negative | 1881555 - 1882136 | 22097.6 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | DXC44_07880 | Not Available | Negative | 1882239 - 1883753 | 55852.0 |
| hypothetical protein | DXC44_07885 | Not Available | Positive | 1883820 - 1884026 | 7450.12 |
| gntr family transcriptional regulator | DXC44_07890 | Not Available | Positive | 1884202 - 1885182 | 38069.7 |
| l-fucose isomerase | DXC44_07895 | Not Available | Positive | 1885204 - 1886979 | 65638.0 |
| l-fucose:h+ symporter permease | DXC44_07900 | Not Available | Positive | 1887092 - 1888405 | 48395.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

